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Membrane transporter/Ion channel Metabolism Microbiology/Virology Neuroscience NF-Κb oxidation-reduction PI3K/Akt/mTOR signaling Proteases/Proteasome Stem Cells Tyrosine Kinase/Adaptors Ubiquitination PROTAC Others
Compound Libraries Focused Bioactive Libraries General Bioactive Libraries Approved / Repurposing Disease Focused Target / Pathway Focused Characteristic Bioactive Libraries Natural Product Libraries Natural Product Library for HTS Characteristic Natural Product Libraries Natural Product Derivatives Libraries Natural Product Library for CADD Drug-like Compound Libraries Fragment Libraries Custom Compound Library
Signaling Pathways Angiogenesis Apoptosis Autophagy Cell Cycle/Checkpoint Chromatin/Epigenetic Cytoskeletal Signaling
DNA Damage/DNA Repair Endocrinology/Hormones GPCR/G Protein Immunology/Inflammation JAK/STAT signaling MAPK Membrane transporter/Ion channel
Metabolism Microbiology/Virology Neuroscience NF-Κb oxidation-reduction PI3K/Akt/mTOR signaling Proteases/Proteasome
Stem Cells Tyrosine Kinase/Adaptors Ubiquitination PROTAC Others
Focused Bioactive Libraries General Bioactive Libraries Approved / Repurposing Disease Focused Target / Pathway Focused Characteristic Bioactive Libraries
Natural Product Libraries Natural Product Library for HTS Characteristic Natural Product Libraries Natural Product Derivatives Libraries Natural Product Library for CADD
Drug-like Compound Libraries Compound Libraries for HTS/HCS
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Cytokines and Growth Factors •   Cytokines •   Growth Factors Receptor Proteins •   Fc Receptors •   Cytokines and Growth Factor Receptors
CD Proteins •   T Cell CD Proteins •   B Cell CD Proteins Immune Checkpoint Proteins •   Co-inhibitory Immune Checkpoint Proteins •   Co-stimulatory Immune Checkpoint Proteins
CAR-T Therapy Target Proteins •   Hematologic Malignancies Target Proteins •   Solid Tumors Target Proteins Enzymes •   Oxidoreductases,EC 1 •   Transferases,EC 2
Viral Proteins •   Coronavirus (CoV) Proteins •   Influenza Proteins Fluorescent Proteins Others

CNS-Penetrant Compound Library

Catalog No. L5900
  Library Compound List   Excel SDF

The blood–brain barrier (BBB) is a highly selective semipermeable border that separates the circulating blood from the brain and extracellular fluid in the central nervous system (CNS). In its neuroprotective role, the blood–brain barrier functions to hinder the delivery of many potentially important diagnostic and therapeutic agents to the brain. Overcoming the difficulty of delivering therapeutic agents to specific regions of the brain presents a major challenge to treatment of most brain disorders. Choosing the compounds that could penetrate BBB into the compound library targeting CNS is critical for CNS drug discovery. Based on the scientific literature, TargetMol collects 516 out of 5000 compounds as CNS-Penetrant Compound Library, which can be used for CNS-Penetrant related research and drug screening for CNS diseases.

All products from TargetMol are for Research Use Only. Not for Human or Veterinary or Therapeutic Use.
Compound Libraries | TargetMol
Pack Size
1 mg
30 μL * 10 mM (in DMSO)
50 μL * 10 mM (in DMSO)
100 μL * 10 mM (in DMSO)
250 μL * 10 mM (in DMSO)
If the above compound libraries do not match your needs,
please contact our compound library specialist for a customized compound library at inquiry@targetmol.com
Request Library
Get quote

Product Description

  • A unique collection of 516 CNS-Penetrant compounds for high throughput screening (HTS) and high content screening (HCS);
  • Targets include Kinases, GPCR, and ion channels, etc.;
  • Effective tool for drug screening in brain disorders, such as brain tumor, mental disorders, and neurodegenerative diseases, etc.;
  • Detailed compound information with structure, target, activity, IC50 value, and biological activity description;
  • Structurally diverse, medicinally active, and cell permeable and CNS penetrant;
  • NMR and HPLC/LCMS validated to ensure high purity and quality;

Library Customization

Targetmol Compound Libraries can be highly customized! Learn More

Packaging And Storage

  • Powder or pre-dissolved DMSO solutions in 96/384 well plate with optional 2D barcode
  • Shipped with blue ice

Supporting Files

Library Handling Instructions (635 KB) Targetmol Library Catalog (13.2 MB) Request for Library Compostion in Excel and SDF files
Request Library Compound List (L5900)

Publications Cited TargetMol Libraries

1. Cell Stem Cell. 2022 Apr 29(4) 545–558. 2. Science Bulletin. 2022. 3. Science Translational Medicine. 2022, 14(656): eabn3231. 4. Science Advances. 2023, 9(9): eade3760. 5. Nature. 2020, 582: 289-293. 6. Nature Biotechnology. 2021, 39(11): 1444-1452. 7. Nature Communications. 2022, 13(1): 1-15.. 8. Nature Communications. 2023, 14(1): 1020.. 9. Nature Communications. 2023, 14(1): 2756..
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Library Composition

Autophagy (107)
Apoptosis (87)
5-HT Receptor (54)
Dopamine Receptor (42)
Antibacterial (40)
Antibiotic (37)
Endogenous Metabolite (34)
AChR (33)
HIV Protease (27)
Adrenergic Receptor (25)
COX (24)
Sodium Channel (23)
Histamine Receptor (22)
GABA Receptor (19)
Mitophagy (18)
Calcium Channel (16)
DNA/RNA Synthesis (14)
Serotonin Transporter (14)
EGFR (14)
Potassium Channel (13)
iGluR (12)
VEGFR (11)
NF-κB (11)
Reverse Transcriptase (11)
Reactive Oxygen Species (11)
Ferroptosis (11)
PI3K (11)
c-Kit (11)
Norepinephrine (11)
Antifungal (10)
HDAC (10)
Parasite (10)
Influenza Virus (9)
CDK (9)
GluR (9)
AChE (9)
PDGFR (9)
FLT (8)
mTOR (8)
MEK (7)
Dehydrogenase (7)
Bcr-Abl (7)
Beta Amyloid (7)
Estrogen/progestogen Receptor (7)
NMDAR (7)
TNF (6)
SARS-CoV (6)
Monoamine Oxidase (6)
Nucleoside Antimetabolite/Analog (6)
P-gp (6)
Topoisomerase (6)
Antifection (6)
Raf (6)
Virus Protease (6)
PDE (6)
DNA Alkylator/Crosslinker (6)
TRP/TRPV Channel (6)
c-Fms (6)
CSF-1R (5)
MAO (5)
Glucocorticoid Receptor (5)
Drug Metabolite (5)
S1P Receptor (5)
Src (5)
LPL Receptor (5)
NOD-like Receptor (NLR) (5)
Adenosine Receptor (5)
Microtubule Associated (5)
P450 (5)
ERK (4)
HSV (4)
p38 MAPK (4)
DNA Alkylation (4)
FGFR (4)
LRRK2 (4)
Transferase (4)
PPAR (4)
Estrogen Receptor/ERR (4)
MMP (4)
Antifolate (4)
IL Receptor (3)
Carbonic Anhydrase (3)
TGF-beta/Smad (3)
Akt (3)
Interleukin (3)
Proton pump (3)
HCV Protease (3)
Opioid Receptor (3)
Molecular Glues (3)
Epigenetic Reader Domain (3)
Ligand for E3 Ligase (3)
CaMK (3)
Phospholipase (3)
ABC (3)
PARP (3)
ALK (3)
Neurokinin receptor (3)
Tyrosine Kinases (3)
ATM/ATR (3)
CRISPR/Cas9 (2)
PD-1/PD-L1 (2)
CFTR (2)
STAT (2)
GPR (2)
Retinoid Receptor (2)
AMPK (2)
Trk receptor (2)
Sirtuin (2)
IκB/IKK (2)
HIF/HIF Prolyl-Hydroxylase (2)
S6 Kinase (2)
HMG-CoA Reductase (2)
Decarboxylase (2)
HSP (2)
Prostaglandin Receptor (2)
Histone Acetyltransferase (2)
NOD (2)
advanced glycation end products (2)
Hedgehog/Smoothened (2)
Gamma-secretase (2)
Isocitrate Dehydrogenase (IDH) (2)
ROS (2)
Monoamine Transporter (2)
BTK (2)
Progesterone Receptor (2)
Ligands for Target Protein for PROTAC (2)
RIP kinase (2)
DNA-PK (2)
Aryl Hydrocarbon Receptor (2)
ROCK (2)
RAAS (2)
Phosphatase (2)
HBV (2)
MRP (2)
Melatonin Receptor (2)
BCL (2)
Mitochondrial Metabolism (2)
Histone Methyltransferase (2)
FAAH (2)
NOS (2)
OX Receptor (2)
CAT (2)
DHFR (2)
Vasopressin Receptor (2)
Proteasome (2)
PAK (2)
ROR (2)
DNA Methyltransferase (1)
Mdm2 (1)
Chloride channel (1)
MLK (1)
HIF (1)
Adenosine deaminase (1)
Glutathione Peroxidase (1)
JNK (1)
AhR (1)
Lipase (1)
Sigma receptor (1)
SGK (1)
Histone Demethylase (1)
Cannabinoid Receptor (1)
Complement System (1)
Ras (1)
Hydrogenase (1)
NADPH (1)
BACE (1)
Antioxidant (1)
Syk (1)
c-Met/HGFR (1)
Tyrosinase (1)
Integrin (1)
Hydroxylase (1)
IGF-1R (1)
GSK-3 (1)
Lipid (1)
Antiviral (1)
Fatty Acid Synthase (1)
JAK (1)
MAPK (1)
Beta-Secretase (1)
BCRP (1)
CCR (1)
GlyT (1)
Telomerase (1)
Chk (1)
Epoxide Hydrolase (1)
Indoleamine 2,3-Dioxygenase (IDO) (1)
DUB (1)
Aurora Kinase (1)
Free radical scavengers (1)
P2X Receptor (1)
PDK (1)
IRE1 (1)
Wnt/beta-catenin (1)
Cysteine Protease (1)
Aromatase (1)
Lipoxygenase (1)
Caspase (1)
PKC (1)
Annexin A (1)
Nrf2 (1)
E1/E2/E3 Enzyme (1)
GST (1)
LDL (1)
RSV (1)
MT Receptor (1)
Pyroptosis (1)
Liver X Receptor (1)

Library Information Sample

Empty 1000025-07-9 1000413-72-8 229005-80-5 1000787-75-6 946387-07-1 1000998-59-3 1175526-27-8 1001288-58-9 1001350-96-4 1001404-83-6 Empty
Vadadustat TAK875 TAK-779 Tegobuvir RN-1734 BMS-687453 AM211 FT011 BMS754807 AAI101
Empty 1001625-82-6 1001645-58-4 1001753-24-7 1001908-89-9 1002304-34-8 1002-84-2 100291-86-9 100299-08-9 10030-52-1 10040-45-6 Empty
RPW-24 SRT1720 hydrochloride INH6 SRT 2183 AMG208 Pentadecanoic acid Apiopaeonoside Pemirolast potassium L-Anserine nitrate salt Sodium Picosulfate
Empty 100427-26-7 1004316-88-4 10045-45-1 100462-37-1 1004990-28-6 100-51-6 1005-24-9 1005264-47-0 1005334-57-5 1005342-46-0 Empty
Lercanidipine Cobicistat 1-Ethyl-2-benzimidazolinone ROSIRIDIN PF-AKT400 Benzyl alcohol 1-Methylnicotinamide chloride MX69 CVT-10216 LCL161
Empty 1005491-05-3 100-55-0 1005504-62-0 1005883-72-6 100643-71-8 1007207-67-1 10075-50-0 1007647-73-5 100784-20-1 10083-24-6 Empty
Tirasemtiv Roniacol Rg3039 Z433927330 Desloratadine CH5132799 5-Bromoindole Smurf1-IN-A01 Halosulfuron-methyl Piceatannol
Empty 100872-83-1 100874-08-6 1009119-64-5 1009119-65-6 100929-71-3 1009298-09-2 1009298-59-2 100929-99-5 1009734-33-1 10097-84-4 Empty
ML346 SB 4 Daclatasvir Daclatasvir dihydrochloride NADPH (tetracyclohexanamine) AZD8055 Vistusertib PAβN dihydrochloride HZ1157 Rotundine
Empty 1009816-48-1 1009817-63-3 1009820-21-6 100986-85-4 101001-34-7 1010411-21-8 1010-60-2 1011244-68-0 1011301-27-1 1011529-10-4 Empty
Thiamet G B-AP15 Silmitasertib Levofloxacin Pamicogrel GSK369796 Dihydrochloride 2-Chloronaphthoquinone TFAP Tenovin3 Azvudine
Empty 101152-94-7 101155-02-6 1011557-82-6 1011-74-1 101-20-2 1012054-59-9 101-21-3 101-26-8 101303-98-4 1013101-36-4 Empty
Milnacipran hydrochloride BW-A78U Tenovin-6 DL-Normetanephrine hydrochloride Triclocarban CUDC101 Chlorpropham Mestinon Zacopride hydrochloride PF04691502
Empty 101-31-5 1013-69-0 1013750-77-0 1013753-99-5 10138-52-0 1013920-15-4 1013937-63-7 1014691-61-2 101477-54-7 101494-95-5 Empty
L-Hyoscyamine Noreugenin ML-030 BC-1382 Gadolinium chloride Vorolanib VTP-27999 TFA GSK0660 Lomerizine hydrochloride 8-CHLOROQUINAZOLIN-4(1H)-ONE
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